PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001890.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 426aa    MW: 48947.5 Da    PI: 5.257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001890.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.23.4e-32141531128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+P+d+e+v  +L +k+ +++      ++++   ++e  +i++++P++Lp  +k + +  +fF+++ k+y+tg+rk+r++
  Itr_sc001890.1_g00004.1  14 LPRGVKFDPSDQEIV-WHLIAKIGAEDlqphpfIDEFIPtVEEDdGICYTHPQNLP-GIKMDGSCSHFFHRAIKAYNTGTRKRRKI 97 
                              799************.778999988886665443332222444435**********.666677888******************86 PP

                      NAM  79 k.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +     + +W++tg++k+vl  +g ++g+kk++v+y   ++  k+ekt+Wvmh+y+l
  Itr_sc001890.1_g00004.1  98 HgdnfgDVRWHKTGRTKPVLL-DGVQKGCKKIMVLYvsPAKGGKPEKTNWVMHQYHL 153
                              555555888************.99************6533555666*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-375172IPR003441NAC domain
PROSITE profilePS5100530.23714172IPR003441NAC domain
PfamPF023651.0E-1315153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKQLYTVTHE WPGLPRGVKF DPSDQEIVWH LIAKIGAEDL QPHPFIDEFI PTVEEDDGIC  60
YTHPQNLPGI KMDGSCSHFF HRAIKAYNTG TRKRRKIHGD NFGDVRWHKT GRTKPVLLDG  120
VQKGCKKIMV LYVSPAKGGK PEKTNWVMHQ YHLGTSEDER EGEYVISKVY YQQQQVKHNK  180
KSECQSPNGH EYLTVKVDPV TPKSVTPEPP FTERRFSSSD AVSLTPAAYC SSNIQEVNYI  240
EDHMETPFQK PGNHDLITEN QIDEMEAKNE NEAGDDPKWY DLEAQNIMDS QQLAEYISLC  300
DEFIISQSPS REDQQNHKEK KRKTRLSDHY ACLGAEDLKK DLEECQDYEQ QNHKEKKCKT  360
RLSDHYACLG AEDLKKDSEC QDYELDPANI ILDTPPDFRL SQLEFPSQDS FIAWGGHKIG  420
SEEQGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362531.11e-180PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-138NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM0ZJN31e-179M0ZJN3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021221e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81622430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-139NAC family protein